Don't worry about lining up your vanes with the blades of your broad head. IMO that makes no difference.

Tuning basically means doing everything you can to your bow so that the arrow wil fly true, no wobble. Assuming the cam is timed properly; set your rest even with the berger hole. Set your arrow to be level or slightly nock high. Do this by moving your d loop up or down. Next set your center shot to about 13/16. That will get you pretty close. Next you can paper tune. Or you can go straight to walk back tune. There is lots of info on Internet on how to do this. That a good place to get started.